{"id":2084,"date":"2017-03-03T10:28:52","date_gmt":"2017-03-03T15:28:52","guid":{"rendered":"http:\/\/site.caes.uga.edu\/pmil\/?p=2084"},"modified":"2018-01-03T16:49:10","modified_gmt":"2018-01-03T21:49:10","slug":"check-out-whats-new-at-peanut-base","status":"publish","type":"post","link":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/2017\/03\/check-out-whats-new-at-peanut-base\/","title":{"rendered":"Check out what\u2019s new at Peanut Base"},"content":{"rendered":"<p>The <a href=\"https:\/\/us13.campaign-archive2.com\/?u=ff3fe0b89e836dfc80515dd83&amp;id=8f8620bde5&amp;e=66b09af1ba\">new newsletter is out for Peanut Base<\/a>, the Peanut Genomics Initiative\u2019s collection of online resources for the peanut research community.<\/p>\n<p>Peanut Base is touting:<\/p>\n<ul>\n<li>The <a href=\"https:\/\/www.surveymonkey.com\/r\/9YVYBS2\">PeanutBase 2017 survey<\/a>. Feedback will help Peanut Base improve the site.<\/li>\n<li>New markers and the <em>Arachis<\/em> SNP chip: 15,746 SNPs from the new <em>Arachis<\/em> SNP chip (<a href=\"https:\/\/dx.doi.org\/10.1038\/srep40577\">Pandey, et al., 2017<\/a>) which were verified to be polymorphic in <em> hypogaea<\/em> are now available at PeanutBase as a <a href=\"https:\/\/peanutbase.org\/gb2\/gbrowse\/Aradu1.0\/?start=8743307;stop=8943306;ref=Aradu.A03;width=1024;version=100;flip=0;grid=1;id=cafccf96d6143aadd94b1f440bea42be;l=polymorphic_array_snps;h_feat=ag140%40yellow\">track<\/a> on both genome browsers, as individual <a href=\"https:\/\/peanutbase.org\/feature\/Arachis\/spp.\/genetic_marker\/AX-147242528\">records<\/a>, and for download via the GBrowse track (see <a href=\"https:\/\/peanutbase.org\/help#faq\">GBrowse FAQ <\/a>for more details).<\/li>\n<li>Transcript atlas and gene expression browser: Check out the <em>A. hypogaea<\/em> transcriptome data from <a href=\"https:\/\/journal.frontiersin.org\/article\/10.3389\/fpls.2016.01446\/full\">Clevenger et al. 2016<\/a>. This Arachis Gene Atlas contains read counts from 22 <em>Arachis hypogaea <\/em>tissues. The PeanutBase gene model pages show gene expression using the \u201celectronic fluorescent pictograph\u201d (eFP) browser. This shows where (and when) in the peanut plant each gene is expressed.<\/li>\n<\/ul>\n<p>Peanut Base is funded through the Peanut Foundation with additional support from USDA.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>The new newsletter is out for Peanut Base, the Peanut Genomics Initiative\u2019s collection of online resources for the peanut research community. Peanut Base is touting: The PeanutBase 2017 survey. Feedback will help Peanut Base improve the site. New markers and the Arachis SNP chip: 15,746 SNPs from the new Arachis SNP chip (Pandey, et al., [&hellip;]<\/p>\n","protected":false},"author":178,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[280,62,7],"tags":[572,532],"class_list":["post-2084","post","type-post","status-publish","format-standard","hentry","category-field-notes","category-in-the-media","category-news","tag-peanut-base","tag-peanut-foundation"],"_links":{"self":[{"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/posts\/2084","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/users\/178"}],"replies":[{"embeddable":true,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/comments?post=2084"}],"version-history":[{"count":2,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/posts\/2084\/revisions"}],"predecessor-version":[{"id":2340,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/posts\/2084\/revisions\/2340"}],"wp:attachment":[{"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/media?parent=2084"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/categories?post=2084"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/site.caes.uga.edu\/ftfpeanutlab\/wp-json\/wp\/v2\/tags?post=2084"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}